From 686bc650efb9f599ffa58bd7e8b26a394d720628 Mon Sep 17 00:00:00 2001 From: CentOS Sources Date: Aug 06 2019 19:02:42 +0000 Subject: import openmpi-4.0.1-1.el8 --- diff --git a/.gitignore b/.gitignore new file mode 100644 index 0000000..e79c547 --- /dev/null +++ b/.gitignore @@ -0,0 +1 @@ +SOURCES/openmpi-4.0.1.tar.bz2 diff --git a/.openmpi.metadata b/.openmpi.metadata new file mode 100644 index 0000000..177a7ff --- /dev/null +++ b/.openmpi.metadata @@ -0,0 +1 @@ +35bf7c9162b08ecdc4876af573786cd290015631 SOURCES/openmpi-4.0.1.tar.bz2 diff --git a/SOURCES/macros.openmpi b/SOURCES/macros.openmpi new file mode 100644 index 0000000..05e613f --- /dev/null +++ b/SOURCES/macros.openmpi @@ -0,0 +1,6 @@ +%_openmpi_load \ + . /etc/profile.d/modules.sh; \ + module load mpi/openmpi-%{_arch}; +%_openmpi_unload \ + . /etc/profile.d/modules.sh; \ + module unload mpi/openmpi-%{_arch}; diff --git a/SOURCES/openmpi.module.in b/SOURCES/openmpi.module.in new file mode 100644 index 0000000..6885013 --- /dev/null +++ b/SOURCES/openmpi.module.in @@ -0,0 +1,21 @@ +#%Module 1.0 +# +# OpenMPI module for use with 'environment-modules' package: +# +conflict mpi +prepend-path PATH @LIBDIR@/bin +prepend-path LD_LIBRARY_PATH @LIBDIR@/lib +prepend-path PKG_CONFIG_PATH @LIBDIR@/lib/pkgconfig +prepend-path MANPATH @MANDIR@ +setenv MPI_BIN @LIBDIR@/bin +setenv MPI_SYSCONFIG @ETCDIR@ +setenv MPI_FORTRAN_MOD_DIR @FMODDIR@ +setenv MPI_INCLUDE @INCDIR@ +setenv MPI_LIB @LIBDIR@/lib +setenv MPI_MAN @MANDIR@ +setenv MPI_PYTHON_SITEARCH @PYSITEARCH@ +setenv MPI_PYTHON2_SITEARCH @PYSITEARCH@ +setenv MPI_PYTHON3_SITEARCH @PYSITEARCH@ +setenv MPI_COMPILER @COMPILER@ +setenv MPI_SUFFIX @SUFFIX@ +setenv MPI_HOME @LIBDIR@ diff --git a/SOURCES/openmpi.pth.py3 b/SOURCES/openmpi.pth.py3 new file mode 100644 index 0000000..ced8c64 --- /dev/null +++ b/SOURCES/openmpi.pth.py3 @@ -0,0 +1 @@ +import sys, os; s = os.getenv('MPI_PYTHON3_SITEARCH'); s and (s in sys.path or sys.path.append(s)) diff --git a/SPECS/openmpi.spec b/SPECS/openmpi.spec new file mode 100644 index 0000000..4c5a5d4 --- /dev/null +++ b/SPECS/openmpi.spec @@ -0,0 +1,354 @@ +%global _hardened_build 1 +# We only compile with gcc, but other people may want other compilers. +# Set the compiler here. +%global opt_cc gcc +# Optional CFLAGS to use with the specific compiler...gcc doesn't need any, +# so uncomment and define to use +#global opt_cflags +%global opt_cxx g++ +#global opt_cxxflags +%global opt_f77 gfortran +#global opt_fflags +%global opt_fc gfortran +#global opt_fcflags + + +# Optional name suffix to use...we leave it off when compiling with gcc, but +# for other compiled versions to install side by side, it will need a +# suffix in order to keep the names from conflicting. +#global _cc_name_suffix -gcc + +%global macrosdir %(d=%{_rpmconfigdir}/macros.d; [ -d $d ] || d=%{_sysconfdir}/rpm; echo $d) + +Name: openmpi%{?_cc_name_suffix} +Version: 4.0.1 +Release: 1%{?dist} +Summary: Open Message Passing Interface +Group: Development/Libraries +License: BSD and MIT and Romio +URL: http://www.open-mpi.org/ + +# We can't use %%{name} here because of _cc_name_suffix +Source0: https://www.open-mpi.org/software/ompi/v4.0/downloads/openmpi-%{version}.tar.bz2 +Source1: openmpi.module.in +Source2: openmpi.pth.py3 +Source3: macros.openmpi + +BuildRequires: gcc-gfortran, gcc-c++ +%ifnarch s390 s390x +BuildRequires: valgrind-devel +%endif +%ifnarch s390 s390x %{arm} +BuildRequires: libibverbs-devel >= 1.1.3, opensm-devel >= 3.3.21 +BuildRequires: librdmacm-devel rdma-core-devel +%endif +# Doesn't compile: +# vt_dyn.cc:958:28: error: 'class BPatch_basicBlockLoop' has no member named 'getLoopHead' +# loop->getLoopHead()->getStartAddress(), loop_stmts ); +#BuildRequires: dyninst-devel +BuildRequires: hwloc-devel +# So configure can find lstopo +BuildRequires: hwloc-gui +BuildRequires: java-devel +%ifnarch s390 s390x +BuildRequires: libfabric-devel +BuildRequires: papi-devel +%endif +BuildRequires: perl-generators +BuildRequires: perl(Getopt::Long) +BuildRequires: pmix-devel +%ifarch x86_64 +BuildRequires: libpsm2-devel +%endif +BuildRequires: torque-devel +BuildRequires: zlib-devel +BuildRequires: rpm-mpi-hooks +BuildRequires: libevent-devel >= 2.0.22 + +Provides: mpi +Requires: environment(modules) +# openmpi currently requires ssh to run +# https://svn.open-mpi.org/trac/ompi/ticket/4228 +Requires: openssh-clients +Requires: libevent >= 2.0.22 + +# Private openmpi libraries +%global __provides_exclude_from %{_libdir}/openmpi/lib/(lib(mca|ompi|open-(pal|rte|trace))|openmpi/).*.so +%global __requires_exclude lib(mca|ompi|open-(pal|rte|trace)|vt).* + +%description +Open MPI is an open source, freely available implementation of both the +MPI-1 and MPI-2 standards, combining technologies and resources from +several other projects (FT-MPI, LA-MPI, LAM/MPI, and PACX-MPI) in +order to build the best MPI library available. A completely new MPI-2 +compliant implementation, Open MPI offers advantages for system and +software vendors, application developers, and computer science +researchers. For more information, see http://www.open-mpi.org/ . + +%package devel +Summary: Development files for openmpi +Group: Development/Libraries +Requires: %{name} = %{version}-%{release}, gcc-gfortran +Provides: mpi-devel +Requires: rpm-mpi-hooks + +%description devel +Contains development headers and libraries for openmpi. + +%package java +Summary: Java library +Group: Development/Libraries +Requires: %{name} = %{version}-%{release} +Requires: java-headless + +%description java +OpenMPI Java library. + +%package java-devel +Summary: Java development files for openmpi +Group: Development/Libraries +Requires: %{name}-java = %{version}-%{release} +Requires: java-devel + +%description java-devel +Contains development wrapper for compiling Java with openmpi. + +# We set this to for convenience, since this is the unique dir we use for this +# particular package, version, compiler +%global namearch openmpi-%{_arch}%{?_cc_name_suffix} + +%package -n python3-openmpi +Summary: OpenMPI support for Python 3 +Group: Development/Libraries +BuildRequires: python3-devel +Requires: %{name} = %{version}-%{release} +Provides: python-openmpi + +%description -n python3-openmpi +OpenMPI support for Python 3. + + +%prep +%setup -q -n openmpi-%{version} + +%build +%set_build_flags +./configure --prefix=%{_libdir}/%{name} \ + --mandir=%{_mandir}/%{namearch} \ + --includedir=%{_includedir}/%{namearch} \ + --sysconfdir=%{_sysconfdir}/%{namearch} \ + --disable-silent-rules \ + --enable-builtin-atomics \ + --enable-mpi-thread-multiple \ +%ifnarch %{power64} + --enable-mpi-cxx \ +%endif + --enable-mpi-java \ + --enable-mpi-fortran=all \ + --enable-cxx-exceptions \ + --with-sge \ +%ifnarch s390 s390x + --with-valgrind \ + --enable-memchecker \ +%endif + --with-hwloc=external \ + --with-pmix=external \ + --with-libevent=external \ + CC=%{opt_cc} CXX=%{opt_cxx} FC=%{opt_fc} \ + LDFLAGS="%{build_ldflags}" \ + CFLAGS="%{?opt_cflags}%{!?opt_cflags:$RPM_OPT_FLAGS}" \ + CXXFLAGS="%{?opt_cxxflags}%{!?opt_cxxflags:$RPM_OPT_FLAGS}" \ + FCFLAGS="%{?opt_fcflags}%{!?opt_fcflags:$RPM_OPT_FLAGS}" \ + --with-contrib-vt-flags='CXXFLAGS="-I%{_includedir}/dyninst -L%{_libdir}/dyninst"' + +make %{?_smp_mflags} V=1 + +%install +make install DESTDIR=%{buildroot} +find %{buildroot}%{_libdir}/%{name}/lib -name \*.la | xargs rm +find %{buildroot}%{_mandir}/%{namearch} -type f | xargs gzip -9 +ln -s mpicc.1.gz %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1.gz +# Remove dangling symlink +rm %{buildroot}%{_mandir}/%{namearch}/man1/mpiCC.1 +mkdir %{buildroot}%{_mandir}/%{namearch}/man{2,4,5,6,8,9,n} + +# Make the environment-modules file +mkdir -p %{buildroot}%{_sysconfdir}/modulefiles/mpi +# Since we're doing our own substitution here, use our own definitions. +sed 's#@LIBDIR@#%{_libdir}/%{name}#; + s#@ETCDIR@#%{_sysconfdir}/%{namearch}#; + s#@FMODDIR@#%{_fmoddir}/%{name}#; + s#@INCDIR@#%{_includedir}/%{namearch}#; + s#@MANDIR@#%{_mandir}/%{namearch}#; + s#@PYSITEARCH@#%{python3_sitearch}/%{name}#; + s#@COMPILER@#openmpi-%{_arch}%{?_cc_name_suffix}#; + s#@SUFFIX@#%{?_cc_name_suffix}_openmpi#' \ + <%{SOURCE1} \ + >%{buildroot}%{_sysconfdir}/modulefiles/mpi/%{namearch} + +# make the rpm config file +install -Dpm 644 %{SOURCE3} %{buildroot}/%{macrosdir}/macros.%{namearch} + +# Link the fortran module to proper location +mkdir -p %{buildroot}%{_fmoddir}/%{name} +for mod in %{buildroot}%{_libdir}/%{name}/lib/*.mod +do + modname=$(basename $mod) + ln -s ../../../%{name}/lib/${modname} %{buildroot}/%{_fmoddir}/%{name}/ +done + +# Link the pkgconfig files into the main namespace as well +mkdir -p %{buildroot}%{_libdir}/pkgconfig +cd %{buildroot}%{_libdir}/pkgconfig +ln -s ../%{name}/lib/pkgconfig/*.pc . +cd - + +# Remove extraneous wrapper link libraries (bug 814798) +sed -i -e s/-ldl// -e s/-lhwloc// \ + %{buildroot}%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt + +# install .pth files +mkdir -p %{buildroot}/%{python3_sitearch}/%{name} +install -pDm0644 %{SOURCE2} %{buildroot}/%{python3_sitearch}/openmpi.pth + +%check +make check + +%files +%license LICENSE +%dir %{_libdir}/%{name} +%dir %{_sysconfdir}/%{namearch} +%dir %{_libdir}/%{name}/bin +%dir %{_libdir}/%{name}/lib +%dir %{_libdir}/%{name}/lib/openmpi +%dir %{_mandir}/%{namearch} +%dir %{_mandir}/%{namearch}/man* +%config(noreplace) %{_sysconfdir}/%{namearch}/* +%{_libdir}/%{name}/bin/*.pl +%{_libdir}/%{name}/bin/mpi[er]* +%{_libdir}/%{name}/bin/ompi* +%{_libdir}/%{name}/bin/orte[-dr_]* +%{_libdir}/%{name}/lib/*.so.* +%{_mandir}/%{namearch}/man1/* +%{_mandir}/%{namearch}/man7/* +%{_libdir}/%{name}/lib/openmpi/* +%{_sysconfdir}/modulefiles/mpi/ +%dir %{_libdir}/%{name}/share +%dir %{_libdir}/%{name}/share/openmpi +%{_libdir}/%{name}/share/openmpi/amca-param-sets +%{_libdir}/%{name}/share/openmpi/help*.txt +%ifnarch s390 %{arm} +%{_libdir}/%{name}/share/openmpi/mca-btl-openib-device-params.ini +%endif + + +%files devel +%dir %{_includedir}/%{namearch} +%{_libdir}/%{name}/bin/mpi[cCf]* +%{_libdir}/%{name}/bin/opal_* +%{_libdir}/%{name}/bin/orte[cCf]* +%{_includedir}/%{namearch}/* +%{_fmoddir}/%{name}/ +%{_libdir}/%{name}/lib/*.so +%{_libdir}/%{name}/lib/*.mod +%{_libdir}/%{name}/lib/pkgconfig/ +%{_libdir}/pkgconfig/*.pc +%{_mandir}/%{namearch}/man1/mpi[cCf]* +%{_mandir}/%{namearch}/man1/opal_* +%{_mandir}/%{namearch}/man3/* +%{_libdir}/%{name}/share/openmpi/openmpi-valgrind.supp +%{_libdir}/%{name}/share/openmpi/*-wrapper-data.txt +%{macrosdir}/macros.%{namearch} + +%files java +%{_libdir}/%{name}/lib/mpi.jar + +%files java-devel +%{_libdir}/%{name}/bin/mpijavac +%{_libdir}/%{name}/bin/mpijavac.pl +# Currently this only contaings openmpi/javadoc +%{_libdir}/%{name}/share/doc/ +%{_mandir}/%{namearch}/man1/mpijavac.1.gz + +%files -n python3-openmpi +%dir %{python3_sitearch}/%{name} +%{python3_sitearch}/openmpi.pth + + +%changelog +* Mon Apr 29 2019 Jarod Wilson - 4.0.1-1 +- Update to upstream v4.0.1 release +- Resolves: rhbz#1660623 + +* Tue Sep 25 2018 Jarod Wilson - 3.1.2-5 +- Update BR: opensm-devel min version and rebuild against opensm 3.3.21 +- Resolves: rhbz#1630653 + +* Mon Sep 24 2018 Jarod Wilson - 3.1.2-4 +- Further tweaks to compile/linker flag usage +- Related: rhbz#1624157 +- Move modulefiles under /etc like our other suppored mpi providers +- Resolves: rhbz#1632399 + +* Tue Sep 18 2018 Jarod Wilson - 3.1.2-3 +- Undo stripping/ignoring of distro-provided optimization flags +- Related: rhbz#1624157 + +* Wed Sep 12 2018 Jarod Wilson - 3.1.2-2 +- Additional tweaks to module paths, fix openmpi-devel R +- Related: rhbz#1623441 + +* Wed Sep 12 2018 Jarod Wilson - 3.1.2-1 +- Update to upstream 3.1.2 bug fix release +- Fix some paths in module file, strip out python2 bits +- Related: rhbz#1623441 + +* Thu Aug 30 2018 Jarod Wilson - 3.1.1-2 +- Bump and rebuild for autogen rpmbuild library dependency fixes +- Related: rhbz#1623441 + +* Mon Jul 02 2018 Jarod Wilson - 3.1.1-1 +- Update to upstream 3.1.1 bug fix release +- Drop BR: on deprecated infinipath-psm + +* Thu May 31 2018 Jarod Wilson - 3.1.0-1 +- Update to upstream 3.1.0 release +- Use external pmix and libevent + +* Thu May 17 2018 Charalampos Stratakis - 2.1.1-11 +- Do not build the python2 subpackage on EL > 7 + +* Wed May 09 2018 Troy Dawson - 2.1.1-10 +- Build with rdma-core-devel instead of libibcm-devel + +* Fri Feb 09 2018 Igor Gnatenko - 2.1.1-9 +- Escape macros in %%changelog + +* Mon Feb 05 2018 Orion Poplawski - 2.1.1-8 +- Rebuild for rdma-core 16.2 + +* Wed Jan 31 2018 Christoph Junghans - 2.1.1-7 +- Rebuild for gfortran-8 + +* Fri Jan 12 2018 Iryna Shcherbina - 2.1.1-6 +- Update Python 2 dependency declarations to new packaging standards + (See https://fedoraproject.org/wiki/FinalizingFedoraSwitchtoPython3) + +* Wed Aug 23 2017 Adam Williamson - 2.1.1-5 +- Disable RDMA support on 32-bit ARM (#1484155) +- Disable hanging opal_fifo test on ppc64le (gh #2526 / #2966) + +* Thu Aug 03 2017 Fedora Release Engineering - 2.1.1-4 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Binutils_Mass_Rebuild + +* Thu Jul 27 2017 Fedora Release Engineering - 2.1.1-3 +- Rebuilt for https://fedoraproject.org/wiki/Fedora_27_Mass_Rebuild + +* Wed Jul 19 2017 Orion Poplawski - 2.1.1-2 +- Provide pkgconfig files in the main namespace as well (1471512) + +* Fri May 12 2017 Orion Poplawski - 2.1.1-1 +- Update to 2.1.1 + +* Thu May 4 2017 Orion Poplawski - 2.1.0-1 +- Update to 2.1.0